Stem-loop tae-MIR171b

Accession

MI0016468

Description

Triticum aestivum tae-MIR171b precursor miRNA

Literature search

21 open access papers mention tae-MIR171b
(59 sentences)

Sequence

134531 reads, 896.0 reads per million, 225 experiments

ugaguuaauccugcgaggggagugaacgCGGUAUUGGUGCGGUUCAAUCagagagcuggcgccccaggaggcaagggguuccucccuucgaUUGAGCCGUGCCAAUAUCACGcgguuucucaugaaucgcauccuccu
...........(((((...(((.((.(((((((((((((((((((((((.(((.(..((.(((((.........))))).))..)))).)))))))))))))))))))..)))).)).))).....))))).......

Structure

ugaguuaaucc     --ggg   u  a    --                   a   a cu  c     agg 
           ugcga     gag ga cgCG  GUAUUGGUGCGGUUCAAUC gag g  gg gcccc   a
           |||||     ||| || ||||  ||||||||||||||||||| ||| |  || |||||   g
           acgcu     cuc uu gcGC  UAUAACCGUGCCGAGUUag uuc c  cc ugggg   g
----uccuccu     aagua   u  g    AC                   c   - cu  u     aac 

Annotation confidence High

Genome context

2D: 132845309-132845446 [-]

Mature tae-miR171b-5p

• Accession: MIMAT0056503
• Description: Triticum aestivum tae-miR171b-5p mature miRNA
• Sequence: 29 - CGGUAUUGGUGCGGUUCAAUC - 49
• Evidence: experimental ; unknown

Mature tae-miR171b-3p

• Accession: MIMAT0018227
• Description: Triticum aestivum tae-miR171b-3p mature miRNA
• Sequence: 92 - UUGAGCCGUGCCAAUAUCACG - 112
• Evidence: not_experimental

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443