miRBase entry: tae-MIR171b

Stem-loop tae-MIR171b


Accession
MI0016468
Description
Triticum aestivum tae-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
19 open access papers mention tae-MIR171b
(54 sentences)

Sequence

6389 reads, 46 reads per million, 116 experiments
ugaguuaauccugcgaggggagugaacgcgguauuggugcgguucaaucagagagcuggcgccccaggaggcaagggguuccucccuucgaUUGAGCCGUGCCAAUAUCACGcgguuucucaugaaucgcauccuccu
...........(((((...(((.((.(((((((((((((((((((((((.(((.(..((.(((((.........))))).))..)))).)))))))))))))))))))..)))).)).))).....))))).......

Structure
ugaguuaaucc     --ggg   u  a    --                   a   a cu  c     agg 
           ugcga     gag ga cgcg  guauuggugcgguucaauc gag g  gg gcccc   a
           |||||     ||| || ||||  ||||||||||||||||||| ||| |  || |||||   g
           acgcu     cuc uu gcGC  UAUAACCGUGCCGAGUUag uuc c  cc ugggg   g
----uccuccu     aagua   u  g    AC                   c   - cu  u     aac 


Annotation confidence Not enough data
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Genome context
2D: 132845309-132845446 [-]

Database links

Mature tae-miR171b

Accession MIMAT0018227
Description Triticum aestivum tae-miR171b mature miRNA
Sequence 92 - UUGAGCCGUGCCAAUAUCACG - 112
Evidence not_experimental

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443