miRBase entry: gma-MIR4345

Stem-loop gma-MIR4345


Accession
MI0016474
Description
Glycine max gma-MIR4345 precursor miRNA

Literature search
1 open access papers mention gma-MIR4345
(1 sentences)

Sequence

ggaagcUAAGACGGAACUUACAAAGAUUguucagguagacauuugagaauaaaugucugucuugaacaaucuuuuuaaguuucgucuuaacuuu
.((((.((((((((((((((.((((((((((((((((((((((((....)))))))))).)))))))))))))).)))))))))))))).))))

Structure
g    c              C              -          a 
 gaag UAAGACGGAACUUA AAAGAUUguucagg uagacauuug g
 |||| |||||||||||||| |||||||||||||| ||||||||||  
 uuuc auucugcuuugaau uuucuaacaaguuc gucuguaaau a
-    a              u              u          a 


Annotation confidence Not enough data
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Genome context
chr14: 48700139-48700232 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR4345
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR4345

Accession MIMAT0018233
Description Glycine max gma-miR4345 mature miRNA
Sequence 7 - UAAGACGGAACUUACAAAGAUU - 28
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14