miRBase entry: gma-MIR4348a

Stem-loop gma-MIR4348a


Accession
MI0016478
Description
Glycine max gma-MIR4348a precursor miRNA
Gene family
MIPF0001966; MIR4348

Literature search
1 open access papers mention gma-MIR4348a
(1 sentences)

Sequence

auguguuAAACUUGUAAGAUGGUGACAUUaugaugguuaugaauguaaaaaugaccuucuauauuggaucaaguuacaaccaauguaaaaagugauuuacauccauaacUAUCACAAUGUCAUCAUCUUGcaaguuugauacaua
(((((((((((((((((((((((((((((.(((((((((((.((((((..((.((.((.((((((((............)))))))).)).)).)))))))).))))))))))).))))))))))))))))))))))))))))).

Structure
-                             a           a      aa  g  c  c        aucaa 
 auguguuAAACUUGUAAGAUGGUGACAUU ugaugguuaug auguaa  au ac uu uauauugg     g
 ||||||||||||||||||||||||||||| ||||||||||| ||||||  || || || ||||||||      
 uacauaguuugaacGUUCUACUACUGUAA ACUAUcaauac uacauu  ua ug aa auguaacc     u
a                             C           c      --  g  a  a        aacau 


Annotation confidence Not enough data
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Genome context
chr12: 37311016-37311160 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR4348a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR4348a-5p

Accession MIMAT0018237
Description Glycine max gma-miR4348a-5p mature miRNA
Sequence 8 - AAACUUGUAAGAUGGUGACAUU - 29
Evidence experimental
Illumina [1-2]

Mature gma-miR4348a-3p

Accession MIMAT0037389
Description Glycine max gma-miR4348a-3p mature miRNA
Sequence 110 - UAUCACAAUGUCAUCAUCUUG - 130
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153

  3. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562