miRBase entry: gma-MIR4399

Stem-loop gma-MIR4399


Accession
MI0016556
Description
Glycine max gma-MIR4399 precursor miRNA

Literature search
2 open access papers mention gma-MIR4399
(2 sentences)

Sequence

caauuuauuaugugucguuagucucuuucuguuaaguaaugacgugggagacagagugucaaauuaucauugacacauuaucuccuucaaugacgugguacuucgucugccaugucaucacUUAACGAAAAAGGACUAACGACagguagua
.....((((((.((((((((((((.(((.((((((((.(((((((((.((((.((((((((.....(((((((.............)))))))..)))))))).)))).))))))))).)))))))).))).)))))))))))).))))))

Structure
caauu      g            c   c        a         g    a        aauua       cacau 
     uauuau ugucguuagucu uuu uguuaagu augacgugg agac gaguguca     ucauuga     u
     |||||| |||||||||||| ||| |||||||| ||||||||| |||| ||||||||     |||||||     a
     augaug aCAGCAAUCAGG AAA GCAAUUca uacuguacc ucug uucauggu     aguaacu     u
-----      g            A   A        c         g    c        ---gc       uccuc 


Annotation confidence Not enough data
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Genome context
chr3: 23233443-23233593 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR4399
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR4399

Accession MIMAT0018315
Description Glycine max gma-miR4399 mature miRNA
Sequence 122 - UUAACGAAAAAGGACUAACGAC - 143
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14