miRBase entry: hsa-mir-3940

Stem-loop hsa-mir-3940


Accession
MI0016597
Symbol
HGNC: MIR3940
Description
Homo sapiens hsa-mir-3940 precursor miRNA
Gene family
MIPF0001599; mir-3940

Literature search
13 open access papers mention hsa-mir-3940
(22 sentences)

Sequence

302 reads, 25 reads per million, 56 experiments
gcuuaucgaggaaaagaucgagGUGGGUUGGGGCGGGCUCUGgggauuuggucucaCAGCCCGGAUCCCAGCCCACUUaccuugguuacucuccuuccuucu
.......(((((...((((((((((((((((((((((((.(((((......))))).))))))..)))))))))....)))))))))....)))))......

Structure
gcuuauc     -aaa         ----         --      C     au 
       gagga    gaucgagGU    GGGUUGGGG  CGGGCU UGggg  u
       |||||    |||||||||    |||||||||  |||||| |||||   
       uuccu    uugguucca    CCCGACCCU  GCCCGA acucu  u
-ucuucc     cuca         UUCA         AG      C     gg 


Annotation confidence High
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Genome context
chr19: 6416410-6416511 [-]

Database links

Mature hsa-miR-3940-3p

Accession MIMAT0018356
Description Homo sapiens hsa-miR-3940-3p mature miRNA
Sequence 57 - CAGCCCGGAUCCCAGCCCACUU - 78
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

Mature hsa-miR-3940-5p

Accession MIMAT0019229
Description Homo sapiens hsa-miR-3940-5p mature miRNA
Sequence 23 - GUGGGUUGGGGCGGGCUCUG - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20498841
    Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers
    Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH
    PLoS One (2010) 5:e10563

  2. PubMed ID: 21199797
    Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
    "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
    "Cancer Res (2011) 71:78-86