miRBase entry: ssc-mir-126

Stem-loop ssc-mir-126


Accession
MI0016619
Description
Sus scrofa ssc-mir-126 precursor miRNA
Gene family
MIPF0000115; mir-126

Literature search
23 open access papers mention ssc-mir-126
(94 sentences)

Sequence

5991 reads, 1833 reads per million, 15 experiments
cgacgggaCAUUAUUACUUUUGGUACGCGcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCGcugucg
((((((..(((((((((((.(((((((.....(((....)))....))))))).)))))))))))..))))))

Structure
      ga           U       CGcug   c 
cgacgg  CAUUAUUACUU UGGUACG     uga a
||||||  ||||||||||| |||||||     |||  
gcuguc  GUAAUAAUGAG GCCAUGC     acu c
      GC           U       -Ucaa   u 


Annotation confidence High
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Genome context
chr1: 313734669-313734741 [+]

Database links

Mature ssc-miR-126-5p

Accession MIMAT0018377
Description Sus scrofa ssc-miR-126-5p mature miRNA
Sequence 9 - CAUUAUUACUUUUGGUACGCG - 29
Evidence experimental
cloned [1], Illumina [2]

Mature ssc-miR-126-3p

Accession MIMAT0018378
Description Sus scrofa ssc-miR-126-3p mature miRNA
Sequence 46 - UCGUACCGUGAGUAAUAAUGCG - 67
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328