miRBase entry: ssc-mir-378-2

Stem-loop ssc-mir-378-2


Accession
MI0016622
Description
Sus scrofa ssc-mir-378-2 precursor miRNA
Gene family
MIPF0000168; mir-378

Literature search
20 open access papers mention ssc-mir-378-2
(98 sentences)

Sequence

75 reads, 38 reads per million, 11 experiments
gugggccuccugaaggcaggcagaaccauugggugaaaagagcACUGGACUUGGAGUCAGAAGGCccg
..((((((.((((...((((........((.((((.......)))).))))))...)))).)))))).

Structure
gu      c    agg    cagaacca  g    aa 
  gggccu cuga   cagg        uu ggug  a
  |||||| ||||   ||||        || ||||  a
  ccCGGA GACU   GUUC        AG UCAc  g
-g      A    GAG    --------  G    ga 


Annotation confidence Not enough data
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Genome context
chr12: 38396700-38396767 [+]

Database links

Mature ssc-miR-378

Accession MIMAT0013868
Description Sus scrofa ssc-miR-378 mature miRNA
Sequence 44 - ACUGGACUUGGAGUCAGAAGGC - 65
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100