miRBase entry: ssc-mir-451

Stem-loop ssc-mir-451


Accession
MI0016623
Description
Sus scrofa ssc-mir-451 precursor miRNA
Gene family
MIPF0000148; mir-451

Literature search
16 open access papers mention ssc-mir-451
(42 sentences)

Sequence

2469 reads, 851 reads per million, 12 experiments
ggggguggcgagcAAACCGUUACCAUUACUGAGUUuaguaaugguaacgguucucuugcugcacc
..((((((((((..(((((((((((((((((....)))))))))))))))))..)))))))).))

Structure
gg  -        cA                 A 
  gg guggcgag  AACCGUUACCAUUACUG G
  || ||||||||  |||||||||||||||||  
  cc cgucguuc  uuggcaaugguaaugau U
--  a        uc                 U 


Annotation confidence Not enough data
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Genome context
chr12: 47177114-47177178 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-451
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-451

Accession MIMAT0018382
Description Sus scrofa ssc-miR-451 mature miRNA
Sequence 14 - AAACCGUUACCAUUACUGAGUU - 35
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100