miRBase entry: hsa-mir-548z

Stem-loop hsa-mir-548z


Accession
MI0016688
Symbol
HGNC: MIR548Z
Description
Homo sapiens hsa-mir-548z precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
41 open access papers mention hsa-mir-548z
(141 sentences)

Sequence

2341 reads, 126 reads per million, 85 experiments
aaguauuaaguuggugcaaaaguaauugagauuuuugcuacugaaaguaauggCAAAAACCGCAAUUACUUUUGCAccaaccuaauagaugccaaug
...(((((.(((((((((((((((((((.(.(((((((((.((....)).))))))))).).))))))))))))))))))).)))))..........

Structure
-------aag     a                   a a         c  a 
          uauua guuggugcaaaaguaauug g uuuuugcua ug a
          ||||| ||||||||||||||||||| | ||||||||| ||  
          auaau caaccACGUUUUCAUUAAC C AAAAACggu au a
guaaccguag     c                   G C         a  g 


Annotation confidence Not enough data
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Genome context
chr12: 64622509-64622605 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-548z
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hsa-miR-548z

Accession MIMAT0018446
Description Homo sapiens hsa-miR-548z mature miRNA
Sequence 54 - CAAAAACCGCAAUUACUUUUGCA - 76
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 20459774
    Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
    Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
    BMC Biol (2010) 8:58