Stem-loop hsa-mir-548z

Accession

MI0016688

Symbol

HGNC: MIR548Z

Description

Homo sapiens hsa-mir-548z precursor miRNA

Literature search

41 open access papers mention hsa-mir-548z
(141 sentences)

Sequence

410 reads, 6 reads per million, 60 experiments

aaguauuaaguuggugcaaaaguaauugagauuuuugcuacugaaaguaauggCAAAAACCGCAAUUACUUUUGCAccaaccuaauagaugccaaug
...(((((.(((((((((((((((((((.(.(((((((((.((....)).))))))))).).))))))))))))))))))).)))))..........

Structure

-------aag     a                   a a         c  a 
          uauua guuggugcaaaaguaauug g uuuuugcua ug a
          ||||| ||||||||||||||||||| | ||||||||| ||  
          auaau caaccACGUUUUCAUUAAC C AAAAACggu au a
guaaccguag     c                   G C         a  g 

Annotation confidence Not enough data

Genome context

chr12: 64622509-64622605 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-548z

Mature hsa-miR-548z

• Accession: MIMAT0018446
• Description: Homo sapiens hsa-miR-548z mature miRNA
• Sequence: 54 - CAAAAACCGCAAUUACUUUUGCA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20459774
   Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
   Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
   BMC Biol (2010) 8:58