miRBase entry: hsa-mir-548aa-1

Stem-loop hsa-mir-548aa-1


Accession
MI0016689
Symbol
HGNC: MIR548AA1
Description
Homo sapiens hsa-mir-548aa-1 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
56 open access papers mention hsa-mir-548aa-1
(170 sentences)

Sequence

4189 reads, 103 reads per million, 90 experiments
cuuuauuagucuggugcaaaagaaacugugguuuuugccauuacuuuuacaggcAAAAACCACAAUUACUUUUGCACCAaccuaauauaacuuguuu
...((((((..(((((((((((.((.(((((((((((((............))))))))))))).)).)))))))))))..))))))..........

Structure
-------cuu      uc           a  c             auuac 
          uauuag  uggugcaaaag aa ugugguuuuugcc     u
          ||||||  ||||||||||| || |||||||||||||      
          auaauc  ACCACGUUUUC UU ACACCAAAAAcgg     u
uuuguucaau      ca           A  A             acauu 


Annotation confidence Not enough data
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Genome context
chr8: 123348034-123348130 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-548aa-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hsa-miR-548aa

Accession MIMAT0018447
Description Homo sapiens hsa-miR-548aa mature miRNA
Sequence 55 - AAAAACCACAAUUACUUUUGCACCA - 79
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 20459774
    Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
    Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
    BMC Biol (2010) 8:58