miRBase entry: hsa-mir-548aa-2

Stem-loop hsa-mir-548aa-2


Accession
MI0016690
Symbol
HGNC: MIR548AA2
Description
Homo sapiens hsa-mir-548aa-2 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
56 open access papers mention hsa-mir-548aa-2
(170 sentences)

Sequence

4216 reads, 109 reads per million, 88 experiments
uuuuauuagguuggugcaaaagaaacugugguuuuugccauuacuuucaauggcAAAAACCACAAUUACUUUUGCACCAaccuaaaucuucccucuc
.....(((((((((((((((((.((.((((((((((((((((......)))))))))))))))).)).)))))))))))))))))............

Structure
-------uuuua                 a  c                ac 
            uuagguuggugcaaaag aa ugugguuuuugccauu  u
            ||||||||||||||||| || ||||||||||||||||   
            aauccaACCACGUUUUC UU ACACCAAAAAcgguaa  u
cucucccuucua                 A  A                cu 


Annotation confidence Not enough data
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Genome context
chr17: 67471489-67471585 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-548aa-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hsa-miR-548aa

Accession MIMAT0018447
Description Homo sapiens hsa-miR-548aa mature miRNA
Sequence 55 - AAAAACCACAAUUACUUUUGCACCA - 79
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 20459774
    Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
    Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
    BMC Biol (2010) 8:58