miRBase entry: oar-mir-493

Stem-loop oar-mir-493


Accession
MI0016912
Description
Ovis aries oar-mir-493 precursor miRNA
Gene family
MIPF0000230; mir-493

Literature search
5 open access papers mention oar-mir-493
(5 sentences)

Sequence

3726 reads, 664 reads per million, 13 experiments
ggggcucccucuggcccccagggccUUGUACAUGGUAGGCUUUCAUUcauucguuugcacauucggUGAAGGUCUACUGUGUGCCAGGcccugugccaggcagcaaguaaaugga
...(((...((((((...((((((((.((((((((((((((((((((.................)))))))))))))))))))).)))))))).)))))).)))...........

Structure
--------ggg   ccc      ccc        U                    cauucgu 
           gcu   ucuggc   cagggccU GUACAUGGUAGGCUUUCAUU       u
           |||   ||||||   |||||||| ||||||||||||||||||||       u
           cga   ggaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg       g
agguaaaugaa   --c      --u        C                    cuuacac 


Annotation confidence High
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Genome context
chr18: 64369115-64369229 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oar-mir-493
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-493-5p

Accession MIMAT0019237
Description Ovis aries oar-miR-493-5p mature miRNA
Sequence 26 - UUGUACAUGGUAGGCUUUCAUU - 47
Evidence experimental
Illumina [1]

Mature oar-miR-493-3p

Accession MIMAT0019238
Description Ovis aries oar-miR-493-3p mature miRNA
Sequence 67 - UGAAGGUCUACUGUGUGCCAGG - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662