miRBase entry: oar-mir-665

Stem-loop oar-mir-665


Accession
MI0016913
Description
Ovis aries oar-mir-665 precursor miRNA
Gene family
MIPF0000404; mir-665

Literature search
2 open access papers mention oar-mir-665
(3 sentences)

Sequence

6497 reads, 1040 reads per million, 13 experiments
cuggaggagggucuccuugAGGGGUCUUGGCCUCUGCCCAGgacucuuucaugACCAGUAGGCCGAGGCCCCUCAcaggcggcugcuuacucucc
..(((((((((((.((((((((((((((((((((((..(((((....))).))..))).)))))))))))))))).))).)))).))).))))..

Structure
cu    -   -    u   -                -   CC  -   c 
  ggag gag gguc ccu ugAGGGGUCUUGGCCU CUG  CA Gga u
  |||| ||| |||| ||| |||||||||||||||| |||  || |||  
  ucuc uuc ucgg gga ACUCCCCGGAGCCGGA GAC  gu cuu c
cc    a   g    c   c                U   CA  a   u 


Annotation confidence Not enough data
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Genome context
chr18: 64379046-64379140 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from oar-mir-665
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-665-5p

Accession MIMAT0019239
Description Ovis aries oar-miR-665-5p mature miRNA
Sequence 20 - AGGGGUCUUGGCCUCUGCCCAG - 41
Evidence experimental
Illumina [1]

Mature oar-miR-665-3p

Accession MIMAT0019240
Description Ovis aries oar-miR-665-3p mature miRNA
Sequence 54 - ACCAGUAGGCCGAGGCCCCUCA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662