miRBase entry: oar-mir-379

Stem-loop oar-mir-379


Accession
MI0016917
Description
Ovis aries oar-mir-379 precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
5 open access papers mention oar-mir-379
(17 sentences)

Sequence

3294 reads, 558 reads per million, 13 experiments
cugauucuggggucagcaccacuccacgguuccugcagagaUGGUAGACUAUGGAACGUAGGCugugugauuucugaccUAUGUAACAUGGUCCACUAACUcucaguauccaauccguccucgga
.......((((((.......)))))).((...(((.((((.((((.(((((((..((((((((.(........).).)))))))..))))))).)))).)))))))...))..((((....))))

Structure
cugauucuggggucagcaccacuccac  uuc   c    a    A       GA       - u ugu 
                           gg   cug agag UGGU GACUAUG  ACGUAGG C g   g
                           ||   ||| |||| |||| |||||||  ||||||| | |    
                           cc   gac ucUC AUCA CUGGUAC  UGUAUcc g c   a
-------------aggcuccugccuaa  uau   -    A    C       AA       a u uuu 


Annotation confidence High
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Genome context
chr18: 64521250-64521374 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from oar-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-379-5p

Accession MIMAT0019247
Description Ovis aries oar-miR-379-5p mature miRNA
Sequence 42 - UGGUAGACUAUGGAACGUAGGC - 63
Evidence experimental
Illumina [1], cloned [2]

Mature oar-miR-379-3p

Accession MIMAT0019248
Description Ovis aries oar-miR-379-3p mature miRNA
Sequence 80 - UAUGUAACAUGGUCCACUAACU - 101
Evidence experimental
Illumina [1], cloned [2]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662

  2. PubMed ID: 23269700
    MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
    "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
    "Physiol Genomics (2013) 45:151-161