Stem-loop sequence oar-mir-411a

Accession

MI0016918 (change log)

Description

Ovis aries miR-411a stem-loop

Gene family

MIPF0000126; mir-379

Literature search

3 open access papers mention oar-mir-411a
(15 sentences)

Stem-loop

   ccccagccucuguc     c uc cugug       cg   a a    a      a a       - uuu 
5'               cucgg g  c     ugguacu  gag g uagu gaccgu u gcguacg c   a
                 ||||| |  |     |||||||  ||| | |||| |||||| | ||||||| |   u
3'               gagcu c  g     acuauga  cuc c auca cuggca a uguaugc g   c
   --------------     - cu ccuaa       --   c a    c      c a       a ugu 

Deep sequencing

5637 reads, 677 reads per million, 13 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr18: 64522514-64522638 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from oar-mir-411a

• oar-mir-379: chr18: 64521250-64521374 [+]
• oar-mir-411a: chr18: 64522514-64522638 [+]
• oar-mir-299: chr18: 64523015-64523075 [+]
• oar-mir-380: chr18: 64524198-64524300 [+]
• oar-mir-411b: chr18: 64524359-64524459 [+]
• oar-mir-1197: chr18: 64524697-64524825 [+]
• oar-mir-323a: chr18: 64524877-64524977 [+]
• oar-mir-758: chr18: 64525175-64525274 [+]
• oar-mir-329b: chr18: 64525872-64525995 [+]
• oar-mir-329a: chr18: 64526187-64526290 [+]
• oar-mir-494: chr18: 64529077-64529173 [+]
• oar-mir-1193: chr18: 64529620-64529722 [+]
• oar-mir-543: chr18: 64531404-64531526 [+]

Database links

• miRBase Tracker:MI0016918

Mature sequence oar-miR-411a-5p

• Accession: MIMAT0019249
• Sequence: 44 - auaguagaccguauagcguacg - 65
• Deep sequencing: 3054 reads, 13 experiments
• Evidence: experimental; Illumina [1]

Mature sequence oar-miR-411a-3p

• Accession: MIMAT0019250
• Sequence: 80 - uauguaacacgguccacuaac - 100
• Deep sequencing: 2583 reads, 13 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).