Stem-loop oar-mir-411b

Accession

MI0016921

Description

Ovis aries oar-mir-411b precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

3 open access papers mention oar-mir-411b
(18 sentences)

Sequence

1196 reads, 310 reads per million, 13 experiments

cauuucgcuguauguggagagaUGGUCGACCAUAAAACGUACGUgugcuuuaugacgUAUGUCACAUGGUCCACUAAUucucagcaucagucagccugagg
......((((.((((.(((((.((((.((((((...((((((((..........))))))))...)))))).)))).))))).))))))))..........

Structure

----cauuuc    u    g     a    C      AAA        gugc 
          gcug augu gagag UGGU GACCAU   ACGUACGU    u
          |||| |||| ||||| |||| ||||||   ||||||||     
          ugac uacg cucuU AUCA CUGGUA   UGUAUgca    u
ggaguccgac    -    a     A    C      CAC        guau 

Annotation confidence High

Genome context

chr18: 64524359-64524459 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from oar-mir-411b

Mature oar-miR-411b-5p

• Accession: MIMAT0019255
• Description: Ovis aries oar-miR-411b-5p mature miRNA
• Sequence: 23 - UGGUCGACCAUAAAACGUACGU - 44
• Evidence: experimental ; Illumina [1]

Mature oar-miR-411b-3p

• Accession: MIMAT0019256
• Description: Ovis aries oar-miR-411b-3p mature miRNA
• Sequence: 58 - UAUGUCACAUGGUCCACUAAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662