miRBase entry: oar-mir-1197

Stem-loop oar-mir-1197


Accession
MI0016922
Description
Ovis aries oar-mir-1197 precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
1 open access papers mention oar-mir-1197
(3 sentences)

Sequence

301 reads, 96 reads per million, 13 experiments
gaggcgaggucggcauCCCUUCCUGGUAUUUGAAGACGcgguugaccaugguguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucgauaucacaucuucgccuuggaagaccuucc
(((((((((..(...........(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..))))))))..)))))))))((((....))))

Structure
------------         uc gcauCCCUUCC       -U     CGc   u       g   -g    - uuu 
            gaggcgagg  g           UGGUAUU  GAAGA   ggu gaccaug ugu  uacg c   a
            |||||||||  |           |||||||  |||||   ||| ||||||| |||  |||| |   u
            uuccgcuuc  c           acuauag  cuUCU   UCA CUGGUAC ACA  AUgc g   u
ccuuccagaagg         ua -----------       cu     ---   U       -   GG    a uau 


Annotation confidence High
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Genome context
chr18: 64524697-64524825 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from oar-mir-1197
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-1197-5p

Accession MIMAT0019257
Description Ovis aries oar-miR-1197-5p mature miRNA
Sequence 17 - CCCUUCCUGGUAUUUGAAGACG - 38
Evidence experimental
Illumina [1]

Mature oar-miR-1197-3p

Accession MIMAT0019258
Description Ovis aries oar-miR-1197-3p mature miRNA
Sequence 74 - UAGGACACAUGGUCUACUUCU - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662