Stem-loop sequence oar-mir-323a

AccessionMI0016923 (change log)
DescriptionOvis aries miR-323a stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
   ----cugcugcuu      u g        g u     gcgc  u    uua 
5'              gguacu g agagaggu g ccgug    gu cgcu   u
                |||||| | |||||||| | |||||    || ||||    
3'              cuaugg c uuucucca c ggcac    ca gcgg   u
   guuccgcccuaau      - g        g u     auua  c    uau
Get sequence
Deep sequencing
3249 reads, 1.06e+03 reads per million, 13 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64524877-64524977 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-323a
oar-mir-379chr18: 64521250-64521374 [+]
oar-mir-411achr18: 64522514-64522638 [+]
oar-mir-299chr18: 64523015-64523075 [+]
oar-mir-380chr18: 64524198-64524300 [+]
oar-mir-411bchr18: 64524359-64524459 [+]
oar-mir-1197chr18: 64524697-64524825 [+]
oar-mir-323achr18: 64524877-64524977 [+]
oar-mir-758chr18: 64525175-64525274 [+]
oar-mir-329bchr18: 64525872-64525995 [+]
oar-mir-329achr18: 64526187-64526290 [+]
oar-mir-494chr18: 64529077-64529173 [+]
oar-mir-1193chr18: 64529620-64529722 [+]
oar-mir-543chr18: 64531404-64531526 [+]
oar-mir-495chr18: 64532840-64532965 [+]
oar-mir-3958chr18: 64534803-64534906 [+]
Database links

Mature sequence oar-miR-323a-5p

Accession MIMAT0019259
Sequence

23 -  

aggugguccguggcgcguucg

 - 43

Get sequence
Deep sequencing30 reads, 8 experiments
Evidence experimental; Illumina [1], cloned [2]

Mature sequence oar-miR-323a-3p

Accession MIMAT0019260
Sequence

58 -  

cacauuacacggucgaccucu

 - 78

Get sequence
Deep sequencing3218 reads, 13 experiments
Evidence experimental; Illumina [1], cloned [2]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).
2
PMID:23269700 "MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200" Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E Physiol Genomics. 45:151-161(2013).