miRBase entry: oar-mir-329b

Stem-loop oar-mir-329b


Accession
MI0016925
Description
Ovis aries oar-mir-329b precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
6 open access papers mention oar-mir-329b
(12 sentences)

Sequence

1979 reads, 410 reads per million, 13 experiments
cacugguguucuggucaguguucacccaugguaccugaagaGAGGUUUUCUGGGUUUCUGUUUCuuuaaugaggaugaAACACACCUGGUUAACCUCUUUuccaguaucaaaucccaucuugaa
....((((..(........)..))))..((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..))))))..............

Structure
cacugguguucuggucaguguucaccca      cu           UU      UUC      u  aa 
                            ugguac  gaagaGAGGUU  CUGGGU   UGUUUC uu  u
                            ||||||  |||||||||||  ||||||   |||||| ||   
                            acuaug  cuUUUCUCCAA  GGUCCA   ACAAag ag  g
--------------aaguucuacccuaa      ac           UU      --C      u  ga 


Annotation confidence Not enough data
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Genome context
chr18: 64525872-64525995 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from oar-mir-329b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-329b-5p

Accession MIMAT0019263
Description Ovis aries oar-miR-329b-5p mature miRNA
Sequence 42 - GAGGUUUUCUGGGUUUCUGUUUC - 64
Evidence experimental
Illumina [1]

Mature oar-miR-329b-3p

Accession MIMAT0019264
Description Ovis aries oar-miR-329b-3p mature miRNA
Sequence 79 - AACACACCUGGUUAACCUCUUU - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662