Stem-loop sequence oar-mir-329b

Accession

MI0016925 (change log)

Description

Ovis aries miR-329b stem-loop

Gene family

MIPF0000110; mir-329

Literature search

6 open access papers mention oar-mir-329b
(12 sentences)

Stem-loop

   cacugguguucuggucaguguucaccca      cu           uu ug   uuc      u  aa 
5'                             ugguac  gaagagagguu  c  ggu   uguuuc uu  u
                               ||||||  |||||||||||  |  |||   |||||| ||   
3'                             acuaug  cuuuucuccaa  g  cca   acaaag ag  g
   --------------aaguucuacccuaa      ac           uu gu   --c      u  ga 

Deep sequencing

2311 reads, 369 reads per million, 13 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr18: 64525872-64525995 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from oar-mir-329b

• oar-mir-379: chr18: 64521250-64521374 [+]
• oar-mir-411a: chr18: 64522514-64522638 [+]
• oar-mir-299: chr18: 64523015-64523075 [+]
• oar-mir-380: chr18: 64524198-64524300 [+]
• oar-mir-411b: chr18: 64524359-64524459 [+]
• oar-mir-1197: chr18: 64524697-64524825 [+]
• oar-mir-323a: chr18: 64524877-64524977 [+]
• oar-mir-758: chr18: 64525175-64525274 [+]
• oar-mir-329b: chr18: 64525872-64525995 [+]
• oar-mir-329a: chr18: 64526187-64526290 [+]
• oar-mir-494: chr18: 64529077-64529173 [+]
• oar-mir-1193: chr18: 64529620-64529722 [+]
• oar-mir-543: chr18: 64531404-64531526 [+]
• oar-mir-495: chr18: 64532840-64532965 [+]
• oar-mir-3958: chr18: 64534803-64534906 [+]

Database links

• miRBase Tracker:MI0016925

Mature sequence oar-miR-329b-5p

• Accession: MIMAT0019263
• Sequence: 42 - gagguuuucuggguuucuguuuc - 64
• Deep sequencing: 6 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence oar-miR-329b-3p

• Accession: MIMAT0019264
• Sequence: 79 - aacacaccugguuaaccucuuu - 100
• Deep sequencing: 2300 reads, 13 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).