miRBase entry: oar-mir-329a

Stem-loop oar-mir-329a


Accession
MI0016926
Description
Ovis aries oar-mir-329a precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
6 open access papers mention oar-mir-329a
(16 sentences)

Sequence

2005 reads, 409 reads per million, 13 experiments
uguaauuggugguacuugaggaGAGGUUUUCUAGGUCUCCGUUUcuuucaugaggaugaAACACACCUGGUUAACCUUUUUuccaguaucagaucccaccuugg
.......(((((((((.(((((((((((..((((((....(((((.(((....))).)))))..))))))..))))))))))).)))).......)))))....

Structure
uguaauu     -------    u           UU      CUCC     u   a 
       ggugg       uacu gaggaGAGGUU  CUAGGU    GUUUc uuc u
       |||||       |||| |||||||||||  ||||||    ||||| |||  
       ccacc       auga cuUUUUUCCAA  GGUCCA    CAAag agg g
---gguu     cuagacu    c           UU      --CA     u   a 


Annotation confidence Not enough data
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Genome context
chr18: 64526187-64526290 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from oar-mir-329a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-329a-5p

Accession MIMAT0019265
Description Ovis aries oar-miR-329a-5p mature miRNA
Sequence 23 - GAGGUUUUCUAGGUCUCCGUUU - 44
Evidence experimental
Illumina [1]

Mature oar-miR-329a-3p

Accession MIMAT0019266
Description Ovis aries oar-miR-329a-3p mature miRNA
Sequence 60 - AACACACCUGGUUAACCUUUUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662