Stem-loop oar-mir-494

Accession

MI0016927

Description

Ovis aries oar-mir-494 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention oar-mir-494
(4 sentences)

Sequence

28496 reads, 4353 reads per million, 13 experiments

aucuucgauacuugaaggagAGGUUAUCCGUGUUGUCUUCUCUuuauuuaugaUGAAACAUACACGGGAAACCUCUuuuuuaguaucaaaucccacc
......((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))))..........

Structure

----aucuuc      u            A       -   C   -  Uuu 
          gauacu gaaggagAGGUU UCCGUGU UGU UUC UC   a
          |||||| |||||||||||| ||||||| ||| ||| ||   u
          cuauga uuuuuUCUCCAA GGGCACA ACA AAG ag   u
ccacccuaaa      -            A       U   -   U  uau 

Annotation confidence Not enough data

Genome context

chr18: 64529077-64529173 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from oar-mir-494

Mature oar-miR-494-5p

• Accession: MIMAT0019267
• Description: Ovis aries oar-miR-494-5p mature miRNA
• Sequence: 21 - AGGUUAUCCGUGUUGUCUUCUCU - 43
• Evidence: experimental ; Illumina [1]

Mature oar-miR-494-3p

• Accession: MIMAT0019268
• Description: Ovis aries oar-miR-494-3p mature miRNA
• Sequence: 54 - UGAAACAUACACGGGAAACCUCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662