miRBase entry: oar-mir-1193

Stem-loop oar-mir-1193


Accession
MI0016928
Description
Ovis aries oar-mir-1193 precursor miRNA
Gene family
MIPF0000714; mir-1193


Sequence

6 reads, 30 reads per million, 3 experiments
ccgcucuccaggguagcugagGGGAUGGUAGACCGGUGACGUGCacuucauuuaugaugUAGGUCACCCGUUUGACUAUCCaccagcacccaguccaucugug
..........((((.((((.(.(((((((((((.((((((.((((..(((....))))))).)))))).)))).))))))).)))))))))............

Structure
--ccgcucucca    a    a G       -    C      G    cu   u 
            gggu gcug g GGAUGGU AGAC GGUGAC UGCa  uca u
            |||| |||| | ||||||| |||| |||||| ||||  |||  
            ccca cgac c CCUAUCA UUUG CCACUG AUgu  agu u
gugucuaccuga    -    - a       G    C      G    --   a 


Annotation confidence Not enough data
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Genome context
chr18: 64529620-64529722 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from oar-mir-1193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-1193-5p

Accession MIMAT0019269
Description Ovis aries oar-miR-1193-5p mature miRNA
Sequence 22 - GGGAUGGUAGACCGGUGACGUGC - 44
Evidence experimental
Illumina [1]

Mature oar-miR-1193-3p

Accession MIMAT0019270
Description Ovis aries oar-miR-1193-3p mature miRNA
Sequence 60 - UAGGUCACCCGUUUGACUAUCC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662