Stem-loop sequence oar-mir-543

AccessionMI0016929 (change log)
DescriptionOvis aries miR-543 stem-loop
Gene family MIPF0000110; mir-329
Literature search

1 open access papers mention oar-mir-543
(1 sentences)

Stem-loop 
   gcugagcugccgaa   uc    cc  u      u          u  -     ucuu     - uuu 
5'               uga  cuga  ug ggugcu aaggagaagu gc ccgug    uuucg c   a
                 |||  ||||  || |||||| |||||||||| || |||||    ||||| |   u
3'               gcu  gacu  ac cuauga uuuuucuuca cg ggcgc    aaagc g   a
   ------------aa   cc    ua  -      c          -  u     uuac     a ugu
Get sequence
Deep sequencing
534 reads, 76.9 reads per million, 13 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64531404-64531526 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-543
oar-mir-411achr18: 64522514-64522638 [+]
oar-mir-299chr18: 64523015-64523075 [+]
oar-mir-380chr18: 64524198-64524300 [+]
oar-mir-411bchr18: 64524359-64524459 [+]
oar-mir-1197chr18: 64524697-64524825 [+]
oar-mir-323achr18: 64524877-64524977 [+]
oar-mir-758chr18: 64525175-64525274 [+]
oar-mir-329bchr18: 64525872-64525995 [+]
oar-mir-329achr18: 64526187-64526290 [+]
oar-mir-494chr18: 64529077-64529173 [+]
oar-mir-1193chr18: 64529620-64529722 [+]
oar-mir-543chr18: 64531404-64531526 [+]
oar-mir-495chr18: 64532840-64532965 [+]
oar-mir-3958chr18: 64534803-64534906 [+]
oar-mir-376echr18: 64537482-64537587 [+]
oar-mir-376cchr18: 64537853-64537957 [+]
oar-mir-376dchr18: 64538218-64538327 [+]
oar-mir-654chr18: 64538374-64538478 [+]
oar-mir-376bchr18: 64538600-64538705 [+]
oar-mir-376achr18: 64538968-64539070 [+]
oar-mir-1185chr18: 64540919-64541024 [+]
Database links

Mature sequence oar-miR-543-5p

Accession MIMAT0019271
Sequence

23 -  

accuguggugcuuaaggag

 - 41

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-543-3p

Accession MIMAT0019272
Sequence

77 -  

aaacauucgcggugcacuucuuu

 - 99

Get sequence
Deep sequencing453 reads, 13 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).