Stem-loop oar-mir-1185

Accession

MI0016938

Description

Ovis aries oar-mir-1185 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

2 open access papers mention oar-mir-1185
(2 sentences)

Sequence

686 reads, 196 reads per million, 13 experiments

agcugcccuuugguacuugaagAGAGGAUACCCUUUGUAUGUUCacuuaauuaauggcgaAUAUACAGAGGGAGACUCUUAUuugcguaucaaacucugacuggga
.....(((((((((((.(((((((((..(.((((((((((((((.((........)).)))))))))))))))..))))).)))).))))))))........))).

Structure

agcug   --------        u    -     GA A              a  uaa 
     ccc        uuugguac ugaa gAGAG  U CCCUUUGUAUGUUC cu   u
     |||        |||||||| |||| |||||  | |||||||||||||| ||    
     ggg        aaacuaug guuU UUCUC  A GGGAGACAUAUAag gg   u
----a   ucagucuc        c    A     AG -              c  uaa 

Annotation confidence High

Genome context

chr18: 64540919-64541024 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-1185

Mature oar-miR-1185-5p

• Accession: MIMAT0019288
• Description: Ovis aries oar-miR-1185-5p mature miRNA
• Sequence: 23 - AGAGGAUACCCUUUGUAUGUUC - 44
• Evidence: experimental ; Illumina [1]

Mature oar-miR-1185-3p

• Accession: MIMAT0019289
• Description: Ovis aries oar-miR-1185-3p mature miRNA
• Sequence: 61 - AUAUACAGAGGGAGACUCUUAU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662