Stem-loop oar-mir-3956

Accession

MI0016939

Description

Ovis aries oar-mir-3956 precursor miRNA

Gene family

MIPF0001577; mir-3956

Sequence

16 reads, 11 reads per million, 4 experiments

ugggagccaucgcccugggccagGUACGUGGAUGCUGAAGGUCAGAgggaagugcuucugucuccacguguguucuccaggccUCUGACCUUCCUGCAUCCCGUUCaucucuaggaugauggcuagaag
....((((((((.((((((...((.(((.((((((.((((((((((((..((.((...(((....)))...)).)).....))))))))))))..)))))))))))...)))))).)))))))).....

Structure

-uggg        c      cca  U   U      -U            ---ga  u  uuc   c 
     agccaucg ccuggg   gG ACG GGAUGC  GAAGGUCAGAgg     ag gc   ugu u
     |||||||| ||||||   || ||| ||||||  ||||||||||||     || ||   |||  
     ucgguagu ggaucu   CU UGC CCUACG  CUUCCAGUCUcc     uc ug   gca c
gaaga        a      cua  -   -      UC            ggacc  u  ugu   c 

Annotation confidence Not enough data

Genome context

chr18: 64541653-64541781 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from oar-mir-3956

Mature oar-miR-3956-5p

• Accession: MIMAT0019290
• Description: Ovis aries oar-miR-3956-5p mature miRNA
• Sequence: 24 - GUACGUGGAUGCUGAAGGUCAGA - 46
• Evidence: experimental ; Illumina [1]

Mature oar-miR-3956-3p

• Accession: MIMAT0019291
• Description: Ovis aries oar-miR-3956-3p mature miRNA
• Sequence: 84 - UCUGACCUUCCUGCAUCCCGUUC - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662