Stem-loop oar-mir-544

Accession

MI0016943

Description

Ovis aries oar-mir-544 precursor miRNA

Gene family

MIPF0000436; mir-544

Literature search

2 open access papers mention oar-mir-544
(6 sentences)

Sequence

151 reads, 92 reads per million, 13 experiments

ucagauuuucaucaccuagggaUCUUGUUAAAAGGCAGAUUCUgauucagggaccaagAUUCUGCAUUUUUAGCAAGUUcccaagugaugcuaaugcuucu
..(((((..((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))..))).))...

Structure

-uc  -   uu      cua    U           -     U   gauuc 
   ag auu  caucac   ggga CUUGUUAAAAG GCAGA UCU     a
   || |||  ||||||   |||| ||||||||||| ||||| |||     g
   uc uaa  guagug   cccU GAACGAUUUUU CGUCU Aga     g
ucu  g   uc      -aa    U           A     U   accag 

Annotation confidence High

Genome context

chr18: 64545480-64545580 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from oar-mir-544

Mature oar-miR-544-5p

• Accession: MIMAT0019298
• Description: Ovis aries oar-miR-544-5p mature miRNA
• Sequence: 23 - UCUUGUUAAAAGGCAGAUUCU - 43
• Evidence: experimental ; Illumina [1]

Mature oar-miR-544-3p

• Accession: MIMAT0019299
• Description: Ovis aries oar-miR-544-3p mature miRNA
• Sequence: 59 - AUUCUGCAUUUUUAGCAAGUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662