miRBase entry: oar-mir-655

Stem-loop oar-mir-655


Accession
MI0016944
Description
Ovis aries oar-mir-655 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

266 reads, 76 reads per million, 13 experiments
aacuguucagggauauuugaggAGAGGUUAUCCGUGUUAUGUUCgcuuggcucaucaugaAUAAUACAUGGUUAACCUCUCUuugaauaucaaacucugccucgagg
...........(((((((((((((((((((.((((((..((((((..((......))))))))..)))))).)))))))))))))))))))...(((......))).

Structure
-----aacuguucagg                   U      UA      cu  gc 
                gauauuugaggAGAGGUUA CCGUGU  UGUUCg  ug  u
                ||||||||||||||||||| ||||||  ||||||  ||   
                cuauaaguuUCUCUCCAAU GGUACA  AUAagu  ac  c
ggagcuccgucucaaa                   U      UA      --  ua 


Annotation confidence High
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Genome context
chr18: 64546384-64546490 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from oar-mir-655
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-655-5p

Accession MIMAT0019300
Description Ovis aries oar-miR-655-5p mature miRNA
Sequence 23 - AGAGGUUAUCCGUGUUAUGUUC - 44
Evidence experimental
Illumina [1]

Mature oar-miR-655-3p

Accession MIMAT0019301
Description Ovis aries oar-miR-655-3p mature miRNA
Sequence 61 - AUAAUACAUGGUUAACCUCUCU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662