Stem-loop oar-mir-3959

Accession

MI0016945

Description

Ovis aries oar-mir-3959 precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

2 open access papers mention oar-mir-3959
(2 sentences)

Sequence

6303 reads, 1106 reads per million, 13 experiments

augguccgugauaggggaguggauGGUUGAUCAGAGAACAUACAUUuugucaaugaUGUAUGUCAACUGAUCCACAGUcccucccuauccagucacuucuc
.......(((((.((((((.((((.((.((((((...(((((((((........)))))))))...)))))).)).)))))))))).....))))).....

Structure

auggucc     ----a      u    G  U      AGA         uug 
       gugau     ggggag ggau GU GAUCAG   ACAUACAUU   u
       |||||     |||||| |||| || ||||||   |||||||||    
       cacug     ucccuc ccUG CA CUAGUC   UGUAUGUag   c
--cucuu     accua      -    A  C      AAC         uaa 

Annotation confidence High

Genome context

chr18: 64548402-64548502 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from oar-mir-3959

Mature oar-miR-3959-5p

• Accession: MIMAT0019302
• Description: Ovis aries oar-miR-3959-5p mature miRNA
• Sequence: 25 - GGUUGAUCAGAGAACAUACAUU - 46
• Evidence: experimental ; Illumina [1]

Mature oar-miR-3959-3p

• Accession: MIMAT0019303
• Description: Ovis aries oar-miR-3959-3p mature miRNA
• Sequence: 57 - UGUAUGUCAACUGAUCCACAGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662