Stem-loop oar-mir-382

Accession

MI0016947

Description

Ovis aries oar-mir-382 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention oar-mir-382
(3 sentences)

Sequence

2944 reads, 604 reads per million, 13 experiments

cccugcucugucuugccucugccuuucugugguacuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgAAUCAUUCACGGACAACACUUuuuucaguaccaaauacuaccucuaag
....((........)).............(((((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..))))))))))))))...............

Structure

cccugcucugucuugccucugccuuucug       u       -A           UG      - uuu 
                             ugguacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
                             ||||||| |||||||  |||||||||||  |||||| |   c
                             accauga cuuuuUU  CAACAGGCACU  CUAAgc g   u
--------------gaaucuccaucauaa       -       CA           UA      a uau 

Annotation confidence High

Genome context

chr18: 64551749-64551874 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-382

Mature oar-miR-382-5p

• Accession: MIMAT0019306
• Description: Ovis aries oar-miR-382-5p mature miRNA
• Sequence: 43 - GAAGUUGUUCGUGGUGGAUUCG - 64
• Evidence: experimental ; Illumina [1]

Mature oar-miR-382-3p

• Accession: MIMAT0019307
• Description: Ovis aries oar-miR-382-3p mature miRNA
• Sequence: 79 - AAUCAUUCACGGACAACACUU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662