miRBase entry: oar-mir-134

Stem-loop oar-mir-134


Accession
MI0016948
Description
Ovis aries oar-mir-134 precursor miRNA
Gene family
MIPF0000112; mir-134

Literature search
7 open access papers mention oar-mir-134
(14 sentences)

Sequence

223 reads, 76 reads per million, 13 experiments
ggugucagcaccguucagggugUGUGACUGGUUGACCAGAGGGgcaagcacuccguucacccUCUGGGCUGCCUCGUCACCAACCcucagcaccaaccgcaccugcc
(((((.......(((.(((((..(((((.(((...((((((((...(((.....)))..))))))))...)))..)))))..))))).))).......)))))....

Structure
----     cagcacc   c     gU     -U   UGA        gca   a 
    ggugu       guu agggu  GUGAC  GGU   CCAGAGGG   agc c
    |||||       ||| |||||  |||||  |||   ||||||||   ||| u
    ccacg       cga ucCCA  CACUG  CCG   GGUCUccc   uug c
ccgu     ccaacca   c     AC     CU   UCG        -ac   c 


Annotation confidence Not enough data
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Genome context
chr18: 64552132-64552238 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from oar-mir-134
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-134-5p

Accession MIMAT0019308
Description Ovis aries oar-miR-134-5p mature miRNA
Sequence 23 - UGUGACUGGUUGACCAGAGGG - 43
Evidence experimental
Illumina [1]

Mature oar-miR-134-3p

Accession MIMAT0019309
Description Ovis aries oar-miR-134-3p mature miRNA
Sequence 63 - UCUGGGCUGCCUCGUCACCAACC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662