miRBase entry: oar-mir-668

Stem-loop oar-mir-668


Accession
MI0016949
Description
Ovis aries oar-mir-668 precursor miRNA
Gene family
MIPF0000357; mir-668

Literature search
2 open access papers mention oar-mir-668
(5 sentences)

Sequence

37 reads, 25 reads per million, 6 experiments
cgggagucaccgcugcuuaggGUAAGUGCGUCUCGGGUGAGCaugcaaugaauugcucgcAUGUCACUCGGCCCACUACCCaagguuguuccaccccuuccuuac
.(((.((....((.((((.(((((.(((.((..(((((((.(((((............)))))))))))))).)))))))).)))).))...)))))........

Structure
-------c   a  cacc  u    a     A   C  CU       G     aauga 
        ggg gu    gc gcuu ggGUA GUG GU  CGGGUGA Caugc     a
        ||| ||    || |||| ||||| ||| ||  ||||||| |||||      
        ccc ca    ug ugga CCCAU CAC CG  GCUCACU GUAcg     u
cauuccuu   -  -ccu  u    a     -   C  --       -     cucgu 


Annotation confidence Not enough data
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Genome context
chr18: 64552683-64552787 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from oar-mir-668
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-668-5p

Accession MIMAT0019310
Description Ovis aries oar-miR-668-5p mature miRNA
Sequence 22 - GUAAGUGCGUCUCGGGUGAGC - 42
Evidence experimental
Illumina [1]

Mature oar-miR-668-3p

Accession MIMAT0019311
Description Ovis aries oar-miR-668-3p mature miRNA
Sequence 61 - AUGUCACUCGGCCCACUACCC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662