miRBase entry: oar-mir-485

Stem-loop oar-mir-485


Accession
MI0016950
Description
Ovis aries oar-mir-485 precursor miRNA
Gene family
MIPF0000201; mir-485

Literature search
2 open access papers mention oar-mir-485
(4 sentences)

Sequence

1517 reads, 331 reads per million, 13 experiments
caaguguccacuuaugguacuugaagAGAGGCUGGCCGUGAUGAAUUCGauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagugucaaauucugccucggagg
((((((.(((....)))))))))((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))...........(((((...))))).

Structure
--caaguguccacuuaugguacuug        CU       -    A    auuc 
                         aagAGAGG  GGCCGUG AUGA UUCG    a
                         ||||||||  ||||||| |||| ||||    u
                         uUCUCUCC  UCGGCAC UACU Gagc    c
ggaggcuccgucuuaaacugugauu        UC       A    -    gaaa 


Annotation confidence High
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Genome context
chr18: 64552826-64552936 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from oar-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-485-5p

Accession MIMAT0019312
Description Ovis aries oar-miR-485-5p mature miRNA
Sequence 27 - AGAGGCUGGCCGUGAUGAAUUCG - 49
Evidence experimental
Illumina [1]

Mature oar-miR-485-3p

Accession MIMAT0019313
Description Ovis aries oar-miR-485-3p mature miRNA
Sequence 64 - GUCAUACACGGCUCUCCUCUCU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662