miRBase entry: oar-mir-154b

Stem-loop oar-mir-154b


Accession
MI0016953
Description
Ovis aries oar-mir-154b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
2 open access papers mention oar-mir-154b
(5 sentences)

Sequence

3668 reads, 659 reads per million, 13 experiments
agagauacuuggugguacuugaagAGAGGUCUUCCAUGGUGCAUUCGcuuuauucuuugacgAAUCAUACAUGGUUGACCUUUUUuuagguaucaaaucuggccuugaa
.(((........(((((((((((((((((((..((((((((.((((((..........).)))))))).)))))..)))))))))))))))))))........)))...

Structure
--a   auacuugg                   UU     -   C     - uuua 
   gag        ugguacuugaagAGAGGUC  CCAUG GUG AUUCG c    u
   |||        |||||||||||||||||||  ||||| ||| ||||| |     
   uuc        acuauggauuUUUUUCCAG  GGUAC UAC UAAgc g    u
aag   cggucuaa                   UU     A   -     a uuuc 


Annotation confidence High
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Genome context
chr18: 64557232-64557340 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from oar-mir-154b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-154b-5p

Accession MIMAT0019317
Description Ovis aries oar-miR-154b-5p mature miRNA
Sequence 25 - AGAGGUCUUCCAUGGUGCAUUCG - 47
Evidence experimental
Illumina [1]

Mature oar-miR-154b-3p

Accession MIMAT0019318
Description Ovis aries oar-miR-154b-3p mature miRNA
Sequence 63 - AAUCAUACAUGGUUGACCUUUUU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662