miRBase entry: oar-mir-496

Stem-loop oar-mir-496


Accession
MI0016954
Description
Ovis aries oar-mir-496 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
2 open access papers mention oar-mir-496
(2 sentences)

Sequence

495 reads, 112 reads per million, 13 experiments
gacacgucagaagccagcauccGAGUCGGGUACUCGAAUGGAgguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUccuuucaguacuaaauucuucuug
......................((((..((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))..))))......

Structure
gacacgucagaagccagcaucc    CG      C   U        u     gu         uua 
                      GAGU  GGUACU GAA GGAgguug ccaug  guguucauu   u
                      ||||  |||||| ||| |||||||| |||||  |||||||||    
                      cuua  ucauga cuu ccUCUAAC GGUAC  UAUGAGUag   u
----------------guucuu    aa      -   u        C     AU         uau 


Annotation confidence Not enough data
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Genome context
chr18: 64557719-64557837 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from oar-mir-496
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-496-5p

Accession MIMAT0019319
Description Ovis aries oar-miR-496-5p mature miRNA
Sequence 23 - GAGUCGGGUACUCGAAUGGA - 42
Evidence experimental
Illumina [1]

Mature oar-miR-496-3p

Accession MIMAT0019320
Description Ovis aries oar-miR-496-3p mature miRNA
Sequence 75 - UGAGUAUUACAUGGCCAAUCU - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662