miRBase entry: oar-mir-377

Stem-loop oar-mir-377


Accession
MI0016955
Description
Ovis aries oar-mir-377 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention oar-mir-377
(2 sentences)

Sequence

317 reads, 110 reads per million, 13 experiments
agagguaucuuggugcucaggcccugcugacguuugauccuugagcAGAGGUUGCCUUUGGUGAAUUCgcuuuauuuauguugaAUCACACAAAGGCAACUUUCGUuugaguaucaaauccugcuuggga
...(((((....)))))....(((.((....(((((((.(((((((.(((((((((((((((((.(((((.........).)))))))).))))))))))))).))))))).)))))))...))..))).

Structure
agagguaucuuggugcucagg   -u  ugac       c       A             -    A    - uuu 
                     ccc  gc    guuugau cuugagc GAGGUUGCCUUUG GUGA UUCg c   a
                     |||  ||    ||||||| ||||||| ||||||||||||| |||| |||| |   u
                     ggg  cg    uaaacua gaguuUG UUUCAACGGAAAC CACU Aagu g   u
--------------------a   uu  -ucc       u       C             A    -    u uau 


Annotation confidence High
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Genome context
chr18: 64559316-64559445 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from oar-mir-377
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-377-5p

Accession MIMAT0019321
Description Ovis aries oar-miR-377-5p mature miRNA
Sequence 47 - AGAGGUUGCCUUUGGUGAAUUC - 68
Evidence experimental
Illumina [1]

Mature oar-miR-377-3p

Accession MIMAT0019322
Description Ovis aries oar-miR-377-3p mature miRNA
Sequence 85 - AUCACACAAAGGCAACUUUCGU - 106
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662