miRBase entry: oar-mir-541

Stem-loop oar-mir-541


Accession
MI0016956
Description
Ovis aries oar-mir-541 precursor miRNA
Gene family
MIPF0000213; mir-541

Literature search
1 open access papers mention oar-mir-541
(1 sentences)

Sequence

162 reads, 124 reads per million, 9 experiments
cugaacuugggccaacgucagggAAAGGAUUCUGCUGUCGGUCCCACUccaaaguucgaaacaugggUGGUGGGCACAGAAUCCGGCCUCUgcuguggcacacgccgccugcuc
........((((..(((.(((((...((((((((.((((.(..((((.(((..(((...))).)))))))).))))))))))))...))))).)))(((....)))))))....

Structure
cugaacuu    --------ca   u     AAA        C    G UC    U   aa   c 
        gggc          acg caggg   GGAUUCUG UGUC G  CCAC cca  guu  
        ||||          ||| |||||   |||||||| |||| |  |||| |||  ||| g
        uccg          ugu gUCUC   CCUAAGAC ACGG U  GGUg ggu  caa  
----cucg    ccgcacacgg   c     CGG        -    G --    -   -a   a 


Annotation confidence High
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Genome context
chr18: 64561254-64561367 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from oar-mir-541
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-541-5p

Accession MIMAT0019323
Description Ovis aries oar-miR-541-5p mature miRNA
Sequence 24 - AAAGGAUUCUGCUGUCGGUCCCACU - 48
Evidence experimental
Illumina [1]

Mature oar-miR-541-3p

Accession MIMAT0019324
Description Ovis aries oar-miR-541-3p mature miRNA
Sequence 68 - UGGUGGGCACAGAAUCCGGCCUCU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662