miRBase entry: oar-mir-409

Stem-loop oar-mir-409


Accession
MI0016958
Description
Ovis aries oar-mir-409 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

8071 reads, 1476 reads per million, 13 experiments
ccucuccaugguacgcggggagAGGUUACCCGAGCAACUUUGCAUcuggacgaCGAAUGUUGCUCGGUGAACCCCUuuucgguaucaaaauccaucagaga
.((((...((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))))))).........)))).

Structure
c    ------cca      g       A    AC         -    - AUc 
 cucu         ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
 ||||         |||||| ||||||| ||||  ||||||||| |||| |    
 gaga         acuaug gcuuuUC CCAA  GGCUCGUUG AAGC g   g
a    cuaccuaaa      -       C    GU         U    a cag 


Annotation confidence High
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Genome context
chr18: 64562168-64562268 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from oar-mir-409
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-409-5p

Accession MIMAT0019327
Description Ovis aries oar-miR-409-5p mature miRNA
Sequence 23 - AGGUUACCCGAGCAACUUUGCAU - 45
Evidence experimental
Illumina [1]

Mature oar-miR-409-3p

Accession MIMAT0019328
Description Ovis aries oar-miR-409-3p mature miRNA
Sequence 54 - CGAAUGUUGCUCGGUGAACCCCU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662