miRBase entry: oar-mir-412

Stem-loop oar-mir-412


Accession
MI0016959
Description
Ovis aries oar-mir-412 precursor miRNA
Gene family
MIPF0000192; mir-412

Literature search
1 open access papers mention oar-mir-412
(1 sentences)

Sequence

509 reads, 191 reads per million, 12 experiments
agggaagaacgucaguaccagcaaccacucugggguacaggacggaUGGUCGACCAGUUGGAAAGUAAUuguuucuaauguaCUUCACCUGGUCCACUAGCUguccguacccacugcagccugc
..........(.((((..(((........)))((((((.((((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).))))))))))))))))).......

Structure
agggaagaac u    accagcaaccacucug      a      a    C      U   AA    -    u 
          g cagu                ggguac ggacgg UGGU GACCAG UGG  AGUA AUug u
          | ||||                |||||| |||||| |||| |||||| |||  |||| ||||  
          c guca                cccaug ccugUC AUCA CUGGUC ACU  UCau uaau u
---cguccga -    ----------------      -      G    C      C   --    g    c 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr18: 64562295-64562418 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from oar-mir-412
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-412-3p

Accession MIMAT0019329
Description Ovis aries oar-miR-412-3p mature miRNA
Sequence 47 - UGGUCGACCAGUUGGAAAGUAAU - 69
Evidence experimental
Illumina [1]

Mature oar-miR-412-5p

Accession MIMAT0019330
Description Ovis aries oar-miR-412-5p mature miRNA
Sequence 83 - CUUCACCUGGUCCACUAGCU - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662