miRBase entry: oar-mir-410

Stem-loop oar-mir-410


Accession
MI0016961
Description
Ovis aries oar-mir-410 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

436 reads, 111 reads per million, 13 experiments
caccugcggucuguggaguaggCGCCACUUUGGGUACUUGAGGAGagguugucugugaugaguucgcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUuuucaguaccacccaccccucgugc
.....((((...((((.((.............((((((.(((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).)))))))))))))))))...))))..

Structure
caccu    ucu    a  aggCGCCACUUUG      U     G            a  a     - uuu 
     gcgg   gugg gu             GGUACU GAGGA agguugucugug ug guucg c   a
     ||||   |||| ||             |||||| ||||| |||||||||||| || ||||| |   u
     ugcu   cacc ca             ccauga cuuuU UCCGGUAGACAC AU UAAgc g   u
---cg    ccc    -  -------------      -     G            A  A     a uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr18: 64562773-64562898 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from oar-mir-410
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-410-5p

Accession MIMAT0019333
Description Ovis aries oar-miR-410-5p mature miRNA
Sequence 23 - CGCCACUUUGGGUACUUGAGGAG - 45
Evidence experimental
Illumina [1]

Mature oar-miR-410-3p

Accession MIMAT0019334
Description Ovis aries oar-miR-410-3p mature miRNA
Sequence 81 - AAUAUAACACAGAUGGCCUGU - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662