miRBase entry: osa-MIR812k

Stem-loop osa-MIR812k


Accession
MI0017245
Description
Oryza sativa osa-MIR812k precursor miRNA
Gene family
MIPF0000345; MIR812

Literature search
9 open access papers mention osa-MIR812k
(16 sentences)

Sequence

6083 reads, 3869 reads per million, 2 experiments
cuccguuucauaauaagugcagccaugaguuuccgcgcucaauuuugaucguccgucuuauuugaaauuuuuuuauaauuagcauuuuuguuguuaugagaugauaaaacaugaauaguacuuuacuugugacuuauguuuuuaaauuuuuucaaaaaauuuuuaauaagACGAACGGUUAAAGUUGGACGCGGaaaaccauggcuacacuuauuuugagacggag
((((((((((.((((((((.(((((((..((((((((.((((((((((((((.(((((((((.((((((((((((((((.((((....))))))))))((((...(((((((((....(((.......)))..)))))))))...))))....)))))))))).))))))))).)))))))))))))).))))))))..))))))).)))))))).))))))))))

Structure
          u        c       ag        c              c         u          uauaauuagcauuuuuguuguuaug    gau         auag   uu 
cuccguuuca aauaagug agccaug  uuuccgcg ucaauuuugaucgu cgucuuauu gaaauuuuuu                         agau   aaaacauga    uac  u
|||||||||| |||||||| |||||||  |||||||| |||||||||||||| ||||||||| ||||||||||                         ||||   |||||||||    |||  a
gaggcagagu uuauucac ucgguac  aaaGGCGC GGUUGAAAUUGGCA GCAgaauaa uuuuaaaaaa                         uuua   uuuuguauu    gug  c
          u        a       ca        A              A         u          ---------------------cuuu    aau         --ca   uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature osa-miR812k

Accession MIMAT0019666
Description Oryza sativa osa-miR812k mature miRNA
Sequence 171 - ACGAACGGUUAAAGUUGGACGCGG - 194
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21113019
    Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
    "Li T, Li H, Zhang YX, Liu JY"
    "Nucleic Acids Res (2011) 39:2821-2833