miRBase entry: osa-MIR812o

Stem-loop osa-MIR812o


Accession
MI0017255
Description
Oryza sativa osa-MIR812o precursor miRNA
Gene family
MIPF0000345; MIR812

Literature search
9 open access papers mention osa-MIR812o
(15 sentences)

Sequence

219 reads, 148 reads per million, 2 experiments
gguuuuCGUGUUCAACGUUUGACUGUCuaucuuauaugaaaauuuuuuuauuaguauuuuuauuauuguuagaugauaaaacaugaauaauacuuuaugcaugacuuaucuuuuuaauuuuuuucauaauuuuuuuaaauaaaauGAACGGUCAAAUGUUAGACACGGAaacu
((((((((((((.(((((((((((((.(((.((((.((((((..((.....(((((....)))))..((((((.(((((..((((.((((....)))).))))..)))))..)))))).........))..)))))).)))).))).))))))))))))).))))))))))))

Structure
            C             C   c    a      uu  uuuauuaguauuuuuauuauu      -u     aa    a    u 
gguuuuCGUGUU AACGUUUGACUGU uau uuau ugaaaa  uu                     guuaga  gauaa  caug auaa a
|||||||||||| ||||||||||||| ||| |||| ||||||  ||                     ||||||  |||||  |||| ||||  
ucaaAGGCACAG UUGUAAACUGGCA Gua aaua auuuuu  aa                     uaauuu  cuauu  guac uauu c
            A             A   a    a      uu  ------------uacuuuuuu      uu     ca    g    u 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature osa-miR812o-5p

Accession MIMAT0019681
Description Oryza sativa osa-miR812o-5p mature miRNA
Sequence 7 - CGUGUUCAACGUUUGACUGUC - 27
Evidence experimental
Illumina [1]
Database links

Mature osa-miR812o-3p

Accession MIMAT0019682
Description Oryza sativa osa-miR812o-3p mature miRNA
Sequence 146 - GAACGGUCAAAUGUUAGACACGGA - 169
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21113019
    Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
    "Li T, Li H, Zhang YX, Liu JY"
    "Nucleic Acids Res (2011) 39:2821-2833