miRBase entry: osa-MIR3982

Stem-loop osa-MIR3982


Accession
MI0017258
Description
Oryza sativa osa-MIR3982 precursor miRNA


Sequence

18 reads, 18 reads per million, 2 experiments
cgaugugGCGCUCCACGUAGGCAACAAUuuugcauccggcccccuuuugcaggacagcguggugguaauauuguacuuagccccuuugagccacaguaccaccccgaaacuccccgaaauccccaaaucccuccucccucacaggagcucaaaggagcuaagugcaauuuuuggaugaggcuggacgcaaaauAGUUGCCUACAUGGAGCGCCAcgucg
(((((((((((((((.(((((((((.(((((((.(((((((((((..(((......))).)).))....((((((((((((.(((((((((.............((........))...............((((.......))))))))))))).))))))))))))..........))))))).))))))).))))))))).)))))))))))))))

Structure
               C         A       a       cccuuuugcaggacagcguggugguaau            c         cacaguaccaccccgaaacuccccga 
cgaugugGCGCUCCA GUAGGCAAC AUuuugc uccggcc                            auuguacuuagc ccuuugagc                          a
||||||||||||||| ||||||||| ||||||| |||||||                            |||||||||||| |||||||||                          a
gcugcACCGCGAGGU CAUCCGUUG uaaaacg aggucgg                            uaacgugaaucg ggaaacucg                          u
               A         A       c       ------------------aguagguuuu            a         aggacacucccuccucccuaaacccc 


Annotation confidence Not enough data
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Genome context
Chr11: 1384740-1384958 [-]

Database links

Mature osa-miR3982-5p

Accession MIMAT0019686
Description Oryza sativa osa-miR3982-5p mature miRNA
Sequence 8 - GCGCUCCACGUAGGCAACAAU - 28
Evidence experimental
Illumina [1]
Database links

Mature osa-miR3982-3p

Accession MIMAT0019687
Description Oryza sativa osa-miR3982-3p mature miRNA
Sequence 194 - AGUUGCCUACAUGGAGCGCCA - 214
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21113019
    Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
    "Li T, Li H, Zhang YX, Liu JY"
    "Nucleic Acids Res (2011) 39:2821-2833