Stem-loop sequence hsa-mir-4436b-1

Accession

MI0017425 (change log)

Previous IDs

hsa-mir-4436b

Symbol

HGNC:MIR4436B1

Description

Homo sapiens miR-4436b-1 stem-loop

Gene family

MIPF0001236; mir-4436

Literature search

2 open access papers mention hsa-mir-4436b-1
(2 sentences)

Stem-loop

      u                  g            aaaugg    g 
5' gug ccucacuuguccacuucu ccugcccugccc      ugga c
   ||| |||||||||||||||||| ||||||||||||      |||| a
3' uac ggagugaacaggugaaga ggacgggacggg      gcuu g
      c                  a            ----ga    a 

Deep sequencing

50 reads, 7.14 reads per million, 28 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 110086433-110086523 [-]
• Overlapping transcripts:

  antisense

  ENST00000309415 ; SH3RF3-201; intron 8

Database links

• EntrezGene:MIR4436B
• HGNC:MIR4436B1
• RNAcentral:URS000075B423_9606
• miRBase Tracker:MI0017425

Mature sequence hsa-miR-4436b-5p

• Accession: MIMAT0019940
• Sequence: 13 - guccacuucugccugcccugcc - 34
• Deep sequencing: 12 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4436b-5p
  • TargetScanVert:hsa-miR-4436b-5p
  • miRDB:hsa-miR-4436b-5p

Mature sequence hsa-miR-4436b-3p

• Accession: MIMAT0019941
• Sequence: 60 - cagggcaggaagaaguggacaa - 81
• Deep sequencing: 82 reads, 22 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000499F46_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4436b-3p
  • TargetScanVert:hsa-miR-4436b-3p
  • miRDB:hsa-miR-4436b-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).