miRBase entry: cel-mir-4805

Stem-loop cel-mir-4805


Accession
MI0017535
Description
Caenorhabditis elegans cel-mir-4805 precursor miRNA


Sequence

90 reads, 8 reads per million, 13 experiments
agucggaggcaggggugUGCGGCAAAUUUGCCGAAUUUGCcguuugucgagcucggcAAAUUUUGAGAUUUUCCGCACAccccugaucggagcc
..((.((..(((((((((((((.((((((.(.((((((((((...........)))))))))).))))))).))))))))))))).)).))...

Structure
-ag  g  gg             C      G C          uuug 
   uc ga  caggggugUGCGG AAAUUU C GAAUUUGCcg    u
   || ||  ||||||||||||| |||||| | ||||||||||    c
   ag cu  guccccACACGCC UUUAGA G UUUAAAcggc    g
ccg  g  -a             U      - U          ucga 


Annotation confidence High
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Genome context
chrII: 1061648-1061741 [+]

Database links

Mature cel-miR-4805-5p

Accession MIMAT0019986
Description Caenorhabditis elegans cel-miR-4805-5p mature miRNA
Sequence 18 - UGCGGCAAAUUUGCCGAAUUUGC - 40
Evidence experimental
Illumina [1]
Database links

Mature cel-miR-4805-3p

Accession MIMAT0019987
Description Caenorhabditis elegans cel-miR-4805-3p mature miRNA
Sequence 58 - AAAUUUUGAGAUUUUCCGCACA - 79
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21085120
    Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
    "Jan CH, Friedman RC, Ruby JG, Bartel DP"
    "Nature (2011) 469:97-101