Stem-loop sequence cel-mir-4812

Accession

MI0017542 (change log)

Description

Caenorhabditis elegans miR-4812 stem-loop

Gene family

MIPF0000460; mir-1829

Literature search

1 open access papers mention cel-mir-4812
(2 sentences)

Stem-loop

   ----agaa   --    cgc        a       aaaa 
5'         gua  agag   uuguagug guuguca    u
           |||  ||||   |||||||| |||||||    u
3'         cau  ucuc   aacgucac caacagu    g
   gguuuuua   ua    uuu        -       auga 

Deep sequencing

421 reads, 0 reads per million, 17 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrX: 15242774-15242849 [-]
• Overlapping transcripts:

  sense

  F39B1.1 ; F39B1.1; intron 7

Clustered miRNAs

< 10kb from cel-mir-4812

• cel-mir-4812: chrX: 15242774-15242849 [-]
• cel-mir-1829c: chrX: 15236362-15236423 [-]

Database links

• RNAcentral:URS000023F50C_6239
• miRBase Tracker:MI0017542

Mature sequence cel-miR-4812-5p

• Accession: MIMAT0019998
• Previous IDs: cel-miR-4812
• Sequence: 7 - aagagcgcuuguagugaguugu - 28
• Deep sequencing: 100 reads, 15 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002699F5_6239

Mature sequence cel-miR-4812-3p

• Accession: MIMAT0019999
• Previous IDs: cel-miR-4812*
• Sequence: 45 - caaccacugcaauuucucuau - 65
• Deep sequencing: 313 reads, 16 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21085120 "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs" Jan CH, Friedman RC, Ruby JG, Bartel DP Nature. 469:97-101(2011).