miRBase entry: cel-mir-4812

Stem-loop cel-mir-4812


Accession
MI0017542
Description
Caenorhabditis elegans cel-mir-4812 precursor miRNA
Gene family
MIPF0000460; mir-1829

Literature search
1 open access papers mention cel-mir-4812
(2 sentences)

Sequence

76 reads, 3 reads per million, 12 experiments
agaaguAAGAGCGCUUGUAGUGAGUUGUcaaaaauugaguaugaCAACCACUGCAAUUUCUCUAUuacauuuuugg
....(((((((...((((((((.(((((((...........)))))))))))))))...))))..)))........

Structure
----agaa   --    CGC        A       aaaa 
        guA  AGAG   UUGUAGUG GUUGUca    u
        |||  ||||   |||||||| |||||||    u
        cau  UCUC   AACGUCAC CAACagu    g
gguuuuua   UA    UUU        -       auga 


Annotation confidence Not enough data
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Genome context
chrX: 15242774-15242849 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-4812
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-4812-5p

Accession MIMAT0019998
Description Caenorhabditis elegans cel-miR-4812-5p mature miRNA
Sequence 7 - AAGAGCGCUUGUAGUGAGUUGU - 28
Evidence experimental
Illumina [1]
Database links

Mature cel-miR-4812-3p

Accession MIMAT0019999
Description Caenorhabditis elegans cel-miR-4812-3p mature miRNA
Sequence 45 - CAACCACUGCAAUUUCUCUAU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21085120
    Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
    "Jan CH, Friedman RC, Ruby JG, Bartel DP"
    "Nature (2011) 469:97-101