miRBase entry: cel-mir-4813

Stem-loop cel-mir-4813


Accession
MI0017543
Description
Caenorhabditis elegans cel-mir-4813 precursor miRNA

Literature search
2 open access papers mention cel-mir-4813
(2 sentences)

Sequence

764 reads, 28 reads per million, 14 experiments
auuucaccAGACUAUCUAGGAAAUAUUGAACUaauacaaauuuuagUUCAAUAUACCGGAUGGUCUGGugaaagcaa
.((((((((((((((((.((..((((((((((((........)))))))))))).))))))))))))))))))....

Structure
---a                A  AA            uac 
    uuucaccAGACUAUCU GG  AUAUUGAACUaa   a
    |||||||||||||||| ||  ||||||||||||    
    aaaguGGUCUGGUAGG CC  UAUAACUUgauu   a
aacg                -  -A            uua 


Annotation confidence High
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Genome context
chrIII: 4571640-4571716 [+]

Database links

Mature cel-miR-4813-5p

Accession MIMAT0020000
Description Caenorhabditis elegans cel-miR-4813-5p mature miRNA
Sequence 9 - AGACUAUCUAGGAAAUAUUGAACU - 32
Evidence experimental
Illumina [1]
Database links

Mature cel-miR-4813-3p

Accession MIMAT0020001
Description Caenorhabditis elegans cel-miR-4813-3p mature miRNA
Sequence 47 - UUCAAUAUACCGGAUGGUCUGG - 68
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21085120
    Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
    "Jan CH, Friedman RC, Ruby JG, Bartel DP"
    "Nature (2011) 469:97-101

  2. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52