Stem-loop cel-mir-4816

Accession

MI0017546

Description

Caenorhabditis elegans cel-mir-4816 precursor miRNA

Sequence

2326 reads, 80 reads per million, 16 experiments

GUAAGUGGUUUUUGUAGAUCAAaauaguuaagaaauuuuuugAUCUACAAUUUUCGCACUUACAG
((((((((...(((((((((((((.((((....)))))))))))))))))....).)))))))..

Structure

--       - -UUU             u    a 
  GUAAGUG G    UUGUAGAUCAAaa aguu a
  ||||||| |    ||||||||||||| ||||  
  CAUUCAC C    AACAUCUAguuuu uuaa g
GA       G UUUU             -    a 

Annotation confidence Not enough data

Genome context

chrI: 6185080-6185144 [+]

Mature cel-miR-4816-5p

• Accession: MIMAT0020005
• Description: Caenorhabditis elegans cel-miR-4816-5p mature miRNA
• Sequence: 1 - GUAAGUGGUUUUUGUAGAUCAA - 22
• Evidence: experimental ; Illumina [1-2]

Mature cel-miR-4816-3p

• Accession: MIMAT0020006
• Description: Caenorhabditis elegans cel-miR-4816-3p mature miRNA
• Sequence: 43 - AUCUACAAUUUUCGCACUUACAG - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21085120
   Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
   "Jan CH, Friedman RC, Ruby JG, Bartel DP"
   "Nature (2011) 469:97-101


2. PubMed ID: 21177960
   Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
   "Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC"
   "Genome Res (2011) 21:286-300