miRBase entry: dme-mir-4947

Stem-loop dme-mir-4947


Accession
MI0017733
Description
Drosophila melanogaster dme-mir-4947 precursor miRNA


Sequence

29 reads, 4 reads per million, 15 experiments
aaagcgacccacccauucccCUUCCGCCCAUAUUUAUCCUUCGucuacuguuucaucgcaggauuuaagugggcggagcacggaauucgggggcguggcg
...((.((((.((((((((..((((((((((.(..(((((.((.............)).)))))..).))))))))))...)))))..))))).)).)).

Structure
aaa  g  -  a   --     -cC          A UU     U  ucuac 
   gc ac cc ccc  auucc   UUCCGCCCAU U  AUCCU CG     u
   || || || |||  |||||   |||||||||| |  ||||| ||     g
   cg ug gg ggg  uaagg   gaggcgggug a  uagga gc     u
--g  g  c  -   cu     cac          a uu     c  uacuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3R: 29008753-29008852 [-]

Database links

Mature dme-miR-4947-5p

Accession MIMAT0020157
Description Drosophila melanogaster dme-miR-4947-5p mature miRNA
Sequence 21 - CUUCCGCCCAUAUUUAUCCUUCG - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215