miRBase entry: dme-mir-4962

Stem-loop dme-mir-4962


Accession
MI0017748
Description
Drosophila melanogaster dme-mir-4962 precursor miRNA


Sequence

81 reads, 15 reads per million, 20 experiments
uccuuucuuuucucuccgucucucucUUUCCCUCUCUCUGUUUACAUUGAgcuguuuuguccgugcacgugcuaGACGAUGUAGAGAGUGAGGGAGAgagcgaauagaauaacagcucauugug
....................((.(((((((((((.((((..((((((((((((((...........))).)))...)))))))))))).))))))))))).)).....................

Structure
-uccuuucuuuucucuccguc  u           U    GU        ---   -   uuug 
                     uc cucUUUCCCUC CUCU  UUACAUUG   Agc ugu    u
                     || ||||||||||| ||||  ||||||||   ||| |||    c
                     ag gagAGAGGGAG GAGA  GAUGUAGC   ucg gca    c
guguuacucgacaauaagaua  c           U    --        AGa   u   cgug 


Annotation confidence Not enough data
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Genome context
chrX: 3777382-3777505 [+]

Database links

Mature dme-miR-4962-5p

Accession MIMAT0020183
Description Drosophila melanogaster dme-miR-4962-5p mature miRNA
Sequence 27 - UUUCCCUCUCUCUGUUUACAUUGA - 50
Evidence experimental
Illumina [1]

Mature dme-miR-4962-3p

Accession MIMAT0020184
Description Drosophila melanogaster dme-miR-4962-3p mature miRNA
Sequence 75 - GACGAUGUAGAGAGUGAGGGAGA - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215