Stem-loop dme-mir-4968

Accession

MI0017754

Description

Drosophila melanogaster dme-mir-4968 precursor miRNA

Sequence

251 reads, 56 reads per million, 30 experiments

uuuuccucagagccgcgacugcuggcguguuauuguugcuguugcagcUAGCUGCCACGGUUUGUUGCUUcacugauuacgcgcaaugCAGCAACAGCAGCAGCAGCAGAagcaacagcaacuaacugcagaggagcaauagcagcugagaguuc
.....(((..(((.((...((((....(((....(((((((((((..((.(((((..(.(((.((((((.((.((........)).)).))))))))).)..)))))))..))))))))))).....)))....))))...)).)))..)))...

Structure

uuuuc   ag   c  gac    ggcg   -uauu           ag  A     CA G   U      U  c  auu 
     cuc  agc gc   ugcu    ugu     guugcuguugc  cU GCUGC  C GUU GUUGCU ca ug   a
     |||  ||| ||   ||||    |||     |||||||||||  || |||||  | ||| |||||| || ||    
     gag  ucg cg   acga    acg     caacgacaacg  GA CGACG  G CGA CAACGA gu ac   c
--cuu   ag   a  aua    ggag   ucaau           aA  -     AC A   -      C  a  gcg 

Annotation confidence High

Genome context

chr3L: 11552539-11552693 [-]

Mature dme-miR-4968-5p

• Accession: MIMAT0020194
• Description: Drosophila melanogaster dme-miR-4968-5p mature miRNA
• Sequence: 49 - UAGCUGCCACGGUUUGUUGCUU - 70
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4968-3p

• Accession: MIMAT0032118
• Description: Drosophila melanogaster dme-miR-4968-3p mature miRNA
• Sequence: 89 - CAGCAACAGCAGCAGCAGCAGA - 110
• Evidence: not_experimental

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215